Publications in 2009

Identifying and classifying biomedical perturbations in text

Rodriguez-Esteban R, Roberts PM, Crawford ME.

Nucleic Acids Res. 2009 Feb; 37(3):771-7

PMID: 19074486

The CALBC Silver Standard Corpus - Harmonizing multiple semantic annotations in a large biomedical corpus

Rebholz-Schuhmann D, Jimeno Yepes AJ, Van Mulligen EM, Kang N, Kors J, Milward D, Corbett P, Hahn U.

Proc 3rd Int Symp Languages Biology Medicine. 2009 Nov; pp64-72


Mining protein-protein interactions from published literature using Linguamatics I2E

Bandy J, Milward D, McQuay S.

Methods Mol Biol. 2009; 563:3-13

PMID: 19597777


Natural language processing (NLP) technology can be used to rapidly extract protein-protein interactions from large collections of published literature. In this chapter we will work through a case study using MEDLINE biomedical abstracts (1) to find how a specific set of 50 genes interact with each other.