Publications in 2009

Identifying and classifying biomedical perturbations in text

Rodriguez-Esteban R, Roberts PM, Crawford ME.

Nucleic Acids Res. 2009 Feb; 37(3):771-7

PMID: 19074486

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2647287/


The CALBC Silver Standard Corpus - Harmonizing multiple semantic annotations in a large biomedical corpus

Rebholz-Schuhmann D, Jimeno Yepes AJ, Van Mulligen EM, Kang N, Kors J, Milward D, Corbett P, Hahn U.

Proc 3rd Int Symp Languages Biology Medicine. 2009 Nov; pp64-72

PMID: N/A

http://lbm2009.biopathway.org/papers/long/The_CALBC_Silver_Standard_Corp...


Mining protein-protein interactions from published literature using Linguamatics I2E

Bandy J, Milward D, McQuay S.

Methods Mol Biol. 2009; 563:3-13

PMID: 19597777

http://link.springer.com/protocol/10.1007%2F978-1-60761-175-2_1

Abstract

Natural language processing (NLP) technology can be used to rapidly extract protein-protein interactions from large collections of published literature. In this chapter we will work through a case study using MEDLINE biomedical abstracts (1) to find how a specific set of 50 genes interact with each other.