Publications

Agile text mining for the 2014 i2b2/ UTHealth Cardiac risk factors challenge

Cormack J, Nath C, Milward D, Raja K, Jonnalagadda SR

J Biomed Inform. 2015 Dec; 58 Suppl:S120-7

PMID: 26209007

http://www.sciencedirect.com/science/article/pii/S1532046415001410


Pathway reporter genes define molecular phenotypes of human cells

Zhang JD, Küng E, Boess F, Certa U, Ebeling M

BMC Genomics. 2015 Apr 24; 16:342

PMID: 25903797

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4415216/

Abstract

Background: The phenotype of a living cell is determined by its pattern of active signaling networks, giving rise to a "molecular phenotype" associated with differential gene expression.


Using natural language processing and machine learning to identify gout flares from electronic clinical notes

Zheng C, Rashid N, Wu YL, Koblick R, Lin AT, Levy GD, Cheetham TC.

Arthritis Care Res (Hoboken). 2014 Nov; 66(11):1740-8

PMID: 24664671

http://onlinelibrary.wiley.com/doi/10.1002/acr.22324/abstract


Mining gene-centric relationships from literature: the roles of gene mutation and gene expression in supporting drug discovery

Tari L,  Patel J, Küntzer J, Li Y, Peng Z, Wang Y, Aguiar L, Cai J

Int J Data Mining Bioinformatics. 2014 Sep; 10(4):357-373

PMID: N/A

http://dl.acm.org/citation.cfm?id=2673965