Publications

Dynamic changes in the microRNA expression profile reveal multiple regulatory mechanisms in the spinal nerve ligation model of neuropathic pain

von Schack D, Agostino MJ, Murray BS, Li Y, Reddy PS, Chen J, Choe SE, Strassle BW, Li C, Bates B, Zhang L, Hu H, Kotnis S, Bingham B, Liu W, Whiteside GT, Samad TA, Kennedy JD, Ajit SK.

PLoS One. 2011 Mar; 6(3):e17670

PMID: 21423802

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3056716


Assessment of NER solutions against the first and second CALBC Silver Standard Corpus

Rebholz-Schuhmann D, Jimeno Yepes A, Li C, Kafkas S, Lewin I, Kang N, Corbett P, Milward D, Buyko E, Beisswanger E, Hornbostel K, Kouznetsov A, Witte R, Laurila JB, Baker CJ, Kuo CJ, Clematide S, Rinaldi F, Farkas R, Móra G, Hara K, Furlong LI, Rautschka M, Neves ML, Pascual-Montano A, Wei Q, Collier N, Chowdhury MF, Lavelli A, Berlanga R, Morante R, Van Asch V, Daelemans W, Marina JL, van Mulligen E, Kors J, Hahn U.

J Biomed Semantics. 2011 Oct; 2 Suppl 5:S11

PMID: 22166494


Enhancing patent landscape analysis with visualization output

Yang YY, Akers L, Barcelon Yang C, Klose T, Pavlek S

World Patent Inform. 2010 Sep; 32(3): 203-220

PMID: N/A

http://www.sciencedirect.com/science/article/pii/S0172219009001471

Abstract

Abstract: A patent landscape analysis can be defined as a state-of-the-art patent search that provides graphic representations of information from search results.


CALBC silver standard corpus

Rebholz-Schuhmann D, Jimeno Yepes AJ, Van Mulligen EM, Kang N, Kors J, Milward D, Corbett P, Buyko E, Beisswanger E, Hahn U.

J Bioinform Comput Biol. 2010 Feb; 8(1):163-79

PMID: 20183881

http://www.worldscinet.com/jbcb/08/0801/S0219720010004562.html


An in silico analysis of microRNAs: mining the miRNAome

Murray BS, Choe SE, Woods M, Ryan TE, Liu W.

Mol Biosyst. 2010 Oct; 6(10):1853-62

PMID: 20539892

http://www.ncbi.nlm.nih.gov/pubmed/20539892

Abstract

Systematic analysis of literature- and experimentally-derived datasets using text mining with ontological enrichment and network modeling revealed global trends in the microRNA (miRNA) interactome.