Publications

Biocuration with insufficient resources and fixed timelines

Rodriguez-Esteban, R

Database (Oxford). 2015 Dec; bav113: pp1-9

PMID: 26708987

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691339/

Abstract

Biological curation, or biocuration, is often studied from the perspective of creating and maintaining databases that have the goal of mapping and tracking certain areas of biology.


PhosphoSitePlus, 2014: mutations, PTMs and recalibrations

Hornbeck PV, Zhang B, Murray B, Kornhauser JM, Latham V, Skrzypek E

Nucleic Acids Res. 2015 Jan; 43(Database issue):D512-20

PMID: 25514926

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383998/


Agile text mining for the 2014 i2b2/ UTHealth Cardiac risk factors challenge

Cormack J, Nath C, Milward D, Raja K, Jonnalagadda SR

J Biomed Inform. 2015 Dec; 58 Suppl:S120-7

PMID: 26209007

http://www.sciencedirect.com/science/article/pii/S1532046415001410


Pathway reporter genes define molecular phenotypes of human cells

Zhang JD, Küng E, Boess F, Certa U, Ebeling M

BMC Genomics. 2015 Apr 24; 16:342

PMID: 25903797

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4415216/

Abstract

Background: The phenotype of a living cell is determined by its pattern of active signaling networks, giving rise to a "molecular phenotype" associated with differential gene expression.


Using natural language processing and machine learning to identify gout flares from electronic clinical notes

Zheng C, Rashid N, Wu YL, Koblick R, Lin AT, Levy GD, Cheetham TC.

Arthritis Care Res (Hoboken). 2014 Nov; 66(11):1740-8

PMID: 24664671

http://onlinelibrary.wiley.com/doi/10.1002/acr.22324/abstract